PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009789447.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 261aa    MW: 30515.6 Da    PI: 5.5665
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009789447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF442.9e-141147339
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    i+++ +r+ tf kR++ ++KK +ELS+LCd+++++ii
  XP_009789447.1 11 IQDHKKRKSTFQKRKACLIKKISELSILCDIKACMII 47
                    8999********************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-17158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.185147IPR002100Transcription factor, MADS-box
CDDcd002668.52E-20277No hitNo description
SuperFamilySSF554552.22E-18283IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRSKIKMEL IQDHKKRKST FQKRKACLIK KISELSILCD IKACMIINEG NNYEVISPQI  60
WPNDPNEVQE LINFYKNQPK RENSLCSFLE NEKKKAEIKM EKLKNKSKTE KYPTWDSRFN  120
YLSEKELRNL AGVLEKKMEN AKGKSEFLKS SRNINQDSNQ EIWDYPELMD NFNQSNTQPI  180
SYMDNQFFQE LTADNVNSMG ILDNIDLNVG DYEFGNSDYM KIEAEEWLVN NGIIGSSSRT  240
QPMELNQYPF IYTGSTQMPY G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789447.10.0PREDICTED: agamous-like MADS-box protein AGL17
TrEMBLK4D6Y45e-76K4D6Y4_SOLLC; Uncharacterized protein
STRINGSolyc11g020320.1.11e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-21M-type_MADS family protein